If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ), 'gf_id' => 'HOM05D000830', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000830' ), 'data_identifier' => 'HOM05D000830', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000830', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '719', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p24250' => 'bna', 'A05p42250' => 'bna', 'A08p24830' => 'bna', 'A09p03300' => 'bna', 'A09p36670' => 'bna', 'Aa31LG2G5260' => 'aar', 'Aa31LG5G15980' => 'aar', 'Aa31LG5G770' => 'aar', 'Aa31LG6G5830' => 'aar', 'Aa31LG9G830' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2363' => 'aag', 'Actinidia02815' => 'ach', 'Actinidia03308' => 'ach', 'Actinidia19496' => 'ach', 'Actinidia23648' => 'ach', 'Actinidia28480' => 'ach', 'Actinidia28599' => 'ach', 'Actinidia28795' => 'ach', 'Actinidia33557' => 'ach', 'Actinidia37924' => 'ach', 'Ah.00g000060' => 'amhyb', 'Ah.06g189550' => 'amhyb', 'Ah.09g232900' => 'amhyb', 'Ah.14g086640' => 'amhyb', 'AL1G43630' => 'aly', 'AL3G15940' => 'aly', 'AL5G16400' => 'aly', 'AL6G52140' => 'aly', 'AL7G48790' => 'aly', 'AL7G48890' => 'aly', 'Aqoxy1G00406' => 'aox', 'Aqoxy3G03649' => 'aox', 'Aqoxy3G04015' => 'aox', 'Aqoxy4G00126' => 'aox', 'Aqoxy5G00696' => 'aox', 'Aqoxy6G00010' => 'aox', 'Aqoxy6G02316' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1P6F44' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7VK1KP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.82YAR7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8V3L21' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8Z0244' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9D6GIC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9M2414' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AMR0WB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUB4MC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DGA0DJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E1PPRT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LTXE73' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NJRK9I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NVF2KD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VCZ1SA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XAZ3P8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YC0LYL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z477D9' => 'arhy', 'AT1G29790' => 'ath', 'AT3G05390' => 'ath', 'AT3G27230' => 'ath', 'AT4G01240' => 'ath', 'AT5G40830' => 'ath', 'ATR0021G033' => 'atr', 'ATR0051G002' => 'atr', 'ATR0497G001' => 'atr', 'ATR0598G306' => 'atr', 'ATR0706G163' => 'atr', 'ATR0745G077' => 'atr', 'ATR0751G045' => 'atr', 'ATR0827G183' => 'atr', 'ATR0910G005' => 'atr', 'ATR0910G006' => 'atr', 'ATR1089G050' => 'atr', 'Atru.chr1.2007' => 'acertr', 'Atru.chr10.1369' => 'acertr', 'Atru.chr13.325' => 'acertr', 'Atru.chr5.571' => 'acertr', 'Atru.chr5.590' => 'acertr', 'Atru.chr6.127' => 'acertr', 'Atru.chr6.189' => 'acertr', 'Atru.chr6.190' => 'acertr', 'Atru.chr6.191' => 'acertr', 'Atru.chr6.69' => 'acertr', 'AUR62000797' => 'cqu', 'AUR62005171' => 'cqu', 'AUR62027572' => 'cqu', 'AUR62035438' => 'cqu', 'AUR62035725' => 'cqu', 'AUR62035787' => 'cqu', 'BcaB03g12180' => 'bca', 'BcaB03g14832' => 'bca', 'BcaB04g19428' => 'bca', 'BcaB04g21449' => 'bca', 'BcaB05g23961' => 'bca', 'BcaB07g30179' => 'bca', 'BcaB07g32566' => 'bca', 'BcaC01g00140' => 'bca', 'BcaC01g03520' => 'bca', 'BcaC03g16058' => 'bca', 'BcaC03g17440' => 'bca', 'BcaC04g23919' => 'bca', 'BcaC05g26994' => 'bca', 'BcaC05g30128' => 'bca', 'BcaC05g30131' => 'bca', 'BcaC05g30150' => 'bca', 'BcaC09g47822' => 'bca', 'BolC1t05696H' => 'bol', 'BolC2t09838H' => 'bol', 'BolC3t19878H' => 'bol', 'BolC5t31578H' => 'bol', 'BolC5t34843H' => 'bol', 'BolC9t53271H' => 'bol', 'BraA02t07414Z' => 'bra', 'BraA05t23028Z' => 'bra', 'BraA08t34438Z' => 'bra', 'BraA09t35968Z' => 'bra', 'BraA09t39186Z' => 'bra', 'C02p38240' => 'bna', 'C02p53870' => 'bna', 'C02p53890' => 'bna', 'C03p76220' => 'bna', 'C05p28540' => 'bna', 'C05p61830' => 'bna', 'C09p03500' => 'bna', 'CAN.G1034.52' => 'can', 'CAN.G1344.5' => 'can', 'CAN.G1379.18' => 'can', 'CAN.G257.35' => 'can', 'CAN.G733.14' => 'can', 'CAN.G78.134' => 'can', 'CAN.G856.3' => 'can', 'CANSAT01G2808' => 'cansat', 'CANSAT25G1619' => 'cansat', 'CANSAT35G0812' => 'cansat', 'CANSAT54G2658' => 'cansat', 'CANSAT94G0016' => 'cansat', 'CARHR029170' => 'chi', 'CARHR079730' => 'chi', 'CARHR148490' => 'chi', 'CARHR249060' => 'chi', 'Carub.0001s2804' => 'cru', 'Carub.0003s0467' => 'cru', 'Carub.0005s0548' => 'cru', 'Carub.0006s3628' => 'cru', 'Carub.0007s3467' => 'cru', 'Ca_05117_v3' => 'car', 'Ca_05855_v3' => 'car', 'Ca_11363_v3' => 'car', 'Ca_13405_v3' => 'car', 'Ca_18288_v3' => 'car', 'Cc02_g23850' => 'ccan', 'Cc02_g33230' => 'ccan', 'Cc09_g09670' => 'ccan', 'Cc10_g01910' => 'ccan', 'CDE02G4612' => 'cde', 'CDE04G2018' => 'cde', 'CDE04G3110' => 'cde', 'CDE05G1272' => 'cde', 'CDE05G2429' => 'cde', 'CDE05G2546' => 'cde', 'CDE05G2892' => 'cde', 'CDE07G0855' => 'cde', 'CDE08G0341' => 'cde', 'Cfa000988' => 'cfa', 'Cfa003863' => 'cfa', 'Cfa006608' => 'cfa', 'Cfa007780' => 'cfa', 'Cfa013926' => 'cfa', 'Cfa019140' => 'cfa', 'Ciclev10001297m.g' => 'ccl', 'Ciclev10003316m.g' => 'ccl', 'Ciclev10003882m.g' => 'ccl', 'Ciclev10006824m.g' => 'ccl', 'Ciclev10013545m.g' => 'ccl', 'Ciclev10015651m.g' => 'ccl', 'Ciclev10024550m.g' => 'ccl', 'CiPaw.01G068600' => 'cil', 'CiPaw.03G109400' => 'cil', 'CiPaw.04G048100' => 'cil', 'CiPaw.07G019600' => 'cil', 'CiPaw.07G152600' => 'cil', 'CiPaw.08G064500' => 'cil', 'CiPaw.09G128100' => 'cil', 'CiPaw.10G094200' => 'cil', 'CiPaw.10G094300' => 'cil', 'ClCG03G007110' => 'cla', 'ClCG03G017010' => 'cla', 'ClCG10G017860' => 'cla', 'COL.COLO4_03894' => 'col', 'COL.COLO4_06376' => 'col', 'COL.COLO4_07490' => 'col', 'COL.COLO4_10487' => 'col', 'COL.COLO4_26173' => 'col', 'COL.COLO4_27426' => 'col', 'COL.COLO4_31128' => 'col', 'Cpa.g.sc11.64' => 'cpa', 'Cpa.g.sc17.102' => 'cpa', 'Cpa.g.sc26.23' => 'cpa', 'Cpa.g.sc48.73' => 'cpa', 'CsaV3_1G032690' => 'csa', 'CsaV3_1G038910' => 'csa', 'CsaV3_3G038430' => 'csa', 'CSS0010992' => 'camsi', 'CSS0016110' => 'camsi', 'CSS0016365' => 'camsi', 'CSS0026163' => 'camsi', 'CSS0031717' => 'camsi', 'CSS0033933' => 'camsi', 'CSS0034265' => 'camsi', 'CSS0038479' => 'camsi', 'CSS0038660' => 'camsi', 'CSS0040436' => 'camsi', 'CSS0040893' => 'camsi', 'CSS0040894' => 'camsi', 'CSS0041421' => 'camsi', 'DCAR_003421' => 'dca', 'DCAR_003949' => 'dca', 'DCAR_005367' => 'dca', 'DCAR_013855' => 'dca', 'DCAR_017497' => 'dca', 'DCAR_022322' => 'dca', 'DCAR_029397' => 'dca', 'Dinv19054' => 'din', 'Dinv28176' => 'din', 'Dinv30700' => 'din', 'Dinv30781' => 'din', 'Dinv31826' => 'din', 'Dinv32292' => 'din', 'Dinv32527' => 'din', 'Dinv33851' => 'din', 'Dinv39500' => 'din', 'Duzib093G0244' => 'dzi', 'Duzib101G0005' => 'dzi', 'Duzib138G1600' => 'dzi', 'Duzib138G1824' => 'dzi', 'Duzib160G0374' => 'dzi', 'Duzib177G0077' => 'dzi', 'Duzib235G0089' => 'dzi', 'Duzib235G0950' => 'dzi', 'ECA233G1926' => 'eca', 'ECA234G3344' => 'eca', 'ECA236G1180' => 'eca', 'ECA236G3881' => 'eca', 'ECA236G4898' => 'eca', 'EL10Ac1g02261' => 'bvu', 'EL10Ac4g09395' => 'bvu', 'EL10Ac8g19777' => 'bvu', 'Eucgr.B01939' => 'egr', 'Eucgr.D02328' => 'egr', 'Eucgr.E02364' => 'egr', 'Eucgr.F01633' => 'egr', 'Eucgr.F02887' => 'egr', 'Eucgr.G00044' => 'egr', 'Eucgr.G00045' => 'egr', 'Eucgr.I02052' => 'egr', 'FAN01G2370' => 'fan', 'FAN02G1393' => 'fan', 'FAN02G2471' => 'fan', 'FAN02G3053' => 'fan', 'FAN03G1578' => 'fan', 'FAN05G4223' => 'fan', 'FAN05G5168' => 'fan', 'FAN06G1569' => 'fan', 'FAN06G2870' => 'fan', 'FAN06G3023' => 'fan', 'FAN09G0972' => 'fan', 'FAN09G2101' => 'fan', 'FAN09G4287' => 'fan', 'FAN10G0199' => 'fan', 'FAN10G3648' => 'fan', 'FAN11G0698' => 'fan', 'FAN12G0804' => 'fan', 'FAN12G1935' => 'fan', 'FAN14G1076' => 'fan', 'FAN15G1720' => 'fan', 'FAN15G3482' => 'fan', 'FAN16G0222' => 'fan', 'FAN19G2092' => 'fan', 'FAN20G0756' => 'fan', 'FAN21G3262' => 'fan', 'FAN23G0191' => 'fan', 'FAN23G3139' => 'fan', 'FAN25G3405' => 'fan', 'FAN26G0105' => 'fan', 'FAN26G3067' => 'fan', 'FAN27G0084' => 'fan', 'FAN28G1565' => 'fan', 'FvH4_1g29960' => 'fve', 'FvH4_2g38780' => 'fve', 'FvH4_3g06240' => 'fve', 'FvH4_6g06250' => 'fve', 'FvH4_6g46550' => 'fve', 'FvH4_7g15510' => 'fve', 'Glyma.01G071000' => 'gma', 'Glyma.02G128200' => 'gma', 'Glyma.04G025700' => 'gma', 'Glyma.05G127200' => 'gma', 'Glyma.07G062701' => 'gma', 'Glyma.08G081900' => 'gma', 'Glyma.09G019000' => 'gma', 'Glyma.14G217600' => 'gma', 'Glyma.15G125000' => 'gma', 'Glyma.16G030800' => 'gma', 'Glyma.17G256400' => 'gma', 'Gohir.A01G112400' => 'ghi', 'Gohir.A06G005400' => 'ghi', 'Gohir.A06G135800' => 'ghi', 'Gohir.A06G160700' => 'ghi', 'Gohir.A07G181000' => 'ghi', 'Gohir.A08G127800' => 'ghi', 'Gohir.A08G209200' => 'ghi', 'Gohir.A10G038200' => 'ghi', 'Gohir.D01G099200' => 'ghi', 'Gohir.D06G001200' => 'ghi', 'Gohir.D06G141066' => 'ghi', 'Gohir.D06G141132' => 'ghi', 'Gohir.D06G166766' => 'ghi', 'Gohir.D07G187500' => 'ghi', 'Gohir.D08G149000' => 'ghi', 'Gohir.D08G226200' => 'ghi', 'Gohir.D10G039200' => 'ghi', 'Gorai.001G208400' => 'gra', 'Gorai.002G124500' => 'gra', 'Gorai.004G154700' => 'gra', 'Gorai.004G240200' => 'gra', 'Gorai.010G005600' => 'gra', 'Gorai.010G164500' => 'gra', 'Gorai.010G194500' => 'gra', 'Gorai.011G041200' => 'gra', 'GSVIVG01009864001' => 'vvi', 'GSVIVG01026979001' => 'vvi', 'GSVIVG01031090001' => 'vvi', 'HanXRQChr01g0002231' => 'han', 'HanXRQChr01g0002251' => 'han', 'HanXRQChr04g0120861' => 'han', 'HanXRQChr06g0183391' => 'han', 'HanXRQChr11g0339611' => 'han', 'HanXRQChr13g0387301' => 'han', 'HanXRQChr16g0533001' => 'han', 'Haze_04168' => 'cav', 'Haze_05529' => 'cav', 'Haze_14093' => 'cav', 'Haze_15572' => 'cav', 'Haze_22608' => 'cav', 'Hma1.2p1_0157F.1_g069310' => 'hma', 'Hma1.2p1_0158F.1_g069980' => 'hma', 'Hma1.2p1_0335F.1_g128810' => 'hma', 'Hma1.2p1_0337F.1_g129120' => 'hma', 'Hma1.2p1_1334F.1_g276300' => 'hma', 'Hma1.2p1_1443F.1_g283830' => 'hma', 'Hma1.2p1_1555F.1_g290500' => 'hma', 'Hma1.2p1_1959F.1_g309080' => 'hma', 'Hma1.2p1_2026F.1_g311560' => 'hma', 'HPP92_001520' => 'vpl', 'HPP92_004510' => 'vpl', 'HPP92_004553' => 'vpl', 'HPP92_005255' => 'vpl', 'HPP92_013445' => 'vpl', 'Hund17839' => 'sun', 'Hund21492' => 'sun', 'Lalb_Chr04g0255251' => 'lal', 'Lalb_Chr07g0188961' => 'lal', 'Lalb_Chr10g0096591' => 'lal', 'Lalb_Chr10g0099481' => 'lal', 'Lalb_Chr10g0104211' => 'lal', 'Lalb_Chr11g0061981' => 'lal', 'Lalb_Chr14g0369761' => 'lal', 'Lalb_Chr20g0119841' => 'lal', 'Lj1A1183T70' => 'lonja', 'Lj1g0024149' => 'lja', 'Lj2g0016918' => 'lja', 'Lj2P516T25' => 'lonja', 'Lj3g0027285' => 'lja', 'Lj4C28T12' => 'lonja', 'Lj4g0015318' => 'lja', 'Lj4P258T13' => 'lonja', 'Lj5g0010490' => 'lja', 'Lj6g0004650' => 'lja', 'Lj9P124T11' => 'lonja', 'Lj9P128T38' => 'lonja', 'Lj9P589T29' => 'lonja', 'Lj9P590T42' => 'lonja', 'LjContig00141g0000388' => 'lja', 'Lsat_1_v5_gn_3_66040' => 'lsa', 'Lsat_1_v5_gn_3_66220' => 'lsa', 'Lsat_1_v5_gn_3_66300' => 'lsa', 'Lsat_1_v5_gn_3_66341' => 'lsa', 'Lsat_1_v5_gn_3_66361' => 'lsa', 'Lsat_1_v5_gn_7_2581' => 'lsa', 'Lsat_1_v5_gn_7_35561' => 'lsa', 'Lsat_1_v5_gn_7_39301' => 'lsa', 'Lsat_1_v5_gn_8_31460' => 'lsa', 'Lsat_1_v5_gn_9_87001' => 'lsa', 'Manes.02G057900' => 'mes', 'Manes.02G079000' => 'mes', 'Manes.05G028400' => 'mes', 'Manes.05G149900' => 'mes', 'Manes.06G015700' => 'mes', 'Manes.09G168800' => 'mes', 'Manes.15G117800' => 'mes', 'Manes.17G065800' => 'mes', 'Manes.18G015500' => 'mes', 'Mapoly0006s0239' => 'mpo', 'Mapoly0071s0103' => 'mpo', 'MBI03_g28953_MAGBIO' => 'mbi', 'MBI07_g11738_MAGBIO' => 'mbi', 'MBI10_g42735_MAGBIO' => 'mbi', 'MD01G1072400' => 'mdo', 'MD05G1290600' => 'mdo', 'MD07G1130500' => 'mdo', 'MD08G1015600' => 'mdo', 'MD12G1217000' => 'mdo', 'MD15G1014500' => 'mdo', 'MD16G1203100' => 'mdo', 'MD17G1063400' => 'mdo', 'MD17G1063500' => 'mdo', 'MD17G1063800' => 'mdo', 'MD17G1262900' => 'mdo', 'Medtr0010s0400' => 'mtr', 'Medtr1g024005' => 'mtr', 'Medtr2g028590' => 'mtr', 'Medtr2g028610' => 'mtr', 'Medtr3g070620' => 'mtr', 'Medtr3g071050' => 'mtr', 'Medtr3g071100' => 'mtr', 'Medtr3g113270' => 'mtr', 'Medtr4g094572' => 'mtr', 'Medtr5g077710' => 'mtr', 'Medtr8g028460' => 'mtr', 'MELO3C002713.2' => 'cme', 'MELO3C009587.2' => 'cme', 'MELO3C015317.2' => 'cme', 'Migut.B00698' => 'egut', 'Migut.B01804' => 'egut', 'Migut.C00817' => 'egut', 'Migut.K00938' => 'egut', 'Migut.M00949' => 'egut', 'Migut.N01992' => 'egut', 'MSTRG.1210' => 'ama', 'MSTRG.16207' => 'ama', 'MSTRG.20866' => 'ama', 'MSTRG.24254' => 'ama', 'Nitab4.5_0000777g0100' => 'nta', 'Nitab4.5_0000915g0060' => 'nta', 'Nitab4.5_0001085g0060' => 'nta', 'Nitab4.5_0001088g0060' => 'nta', 'Nitab4.5_0001242g0030' => 'nta', 'Nitab4.5_0001533g0020' => 'nta', 'Nitab4.5_0002144g0070' => 'nta', 'Nitab4.5_0002344g0130' => 'nta', 'Nitab4.5_0003501g0060' => 'nta', 'Nitab4.5_0003830g0010' => 'nta', 'Nitab4.5_0004055g0030' => 'nta', 'Nitab4.5_0005489g0040' => 'nta', 'Nitab4.5_0006947g0010' => 'nta', 'Nitab4.5_0008283g0030' => 'nta', 'Nitab4.5_0008782g0080' => 'nta', 'Nitab4.5_0011736g0010' => 'nta', 'Nitab4.5_0013906g0010' => 'nta', 'Nn1g01715' => 'nnu', 'Nn3g17495' => 'nnu', 'Nn3g20868' => 'nnu', 'Nn4g24473' => 'nnu', 'Nn4g25924' => 'nnu', 'Nn4g26480' => 'nnu', 'Nn5g27108' => 'nnu', 'Oeu002652.1' => 'oeu', 'Oeu004420.1' => 'oeu', 'Oeu010634.1' => 'oeu', 'Oeu012498.1' => 'oeu', 'Oeu012500.1' => 'oeu', 'Oeu020843.1' => 'oeu', 'Oeu021513.1' => 'oeu', 'Oeu024519.1' => 'oeu', 'Oeu027549.1' => 'oeu', 'Oeu046864.1' => 'oeu', 'Oeu051838.1' => 'oeu', 'Oeu054710.1' => 'oeu', 'Os06g0138600' => 'osa', 'Os06g0474300' => 'osa', 'Os08g0113400' => 'osa', 'Os10g0578600' => 'osa', 'Peaxi162Scf00020g00162' => 'pax', 'Peaxi162Scf00037g00082' => 'pax', 'Peaxi162Scf00037g00813' => 'pax', 'Peaxi162Scf00045g10139' => 'pax', 'Peaxi162Scf00048g00172' => 'pax', 'Peaxi162Scf00186g00025' => 'pax', 'Peaxi162Scf00194g00098' => 'pax', 'Peaxi162Scf00194g00937' => 'pax', 'Peaxi162Scf00334g00114' => 'pax', 'Peaxi162Scf00336g01717' => 'pax', 'Peaxi162Scf00336g01718' => 'pax', 'Peaxi162Scf00424g00043' => 'pax', 'Peaxi162Scf00482g00411' => 'pax', 'PGR004G2710' => 'pgr', 'PGR031G1315' => 'pgr', 'PGR042G1064' => 'pgr', 'PGR042G1470' => 'pgr', 'PGR083G2014' => 'pgr', 'PGR083G2451' => 'pgr', 'PGSC0003DMG400000071' => 'stu', 'PGSC0003DMG400003067' => 'stu', 'PGSC0003DMG400014282' => 'stu', 'PGSC0003DMG400014609' => 'stu', 'PGSC0003DMG400015028' => 'stu', 'PGSC0003DMG400016202' => 'stu', 'PGSC0003DMG400018221' => 'stu', 'PGSC0003DMG400024699' => 'stu', 'PGSC0003DMG400032473' => 'stu', 'PGSC0003DMG400034105' => 'stu', 'Phvul.001G008400' => 'pvu', 'Phvul.002G197700' => 'pvu', 'Phvul.003G044100' => 'pvu', 'Phvul.006G133100' => 'pvu', 'Phvul.009G015500' => 'pvu', 'Phvul.010G105300' => 'pvu', 'Potri.001G352700' => 'ptr', 'Potri.002G024800' => 'ptr', 'Potri.002G165300' => 'ptr', 'Potri.004G083800' => 'ptr', 'Potri.004G116900' => 'ptr', 'Potri.004G231100' => 'ptr', 'Potri.004G232200' => 'ptr', 'Potri.005G236600' => 'ptr', 'Potri.011G079000' => 'ptr', 'Potri.013G019400' => 'ptr', 'Potri.017G135100' => 'ptr', 'Pp3c13_19490' => 'ppa', 'Pp3c1_20859' => 'ppa', 'Pp3c20_13850' => 'ppa', 'Pp3c3_20680' => 'ppa', 'Pp3c4_15100' => 'ppa', 'Prupe.1G368400' => 'ppe', 'Prupe.2G178700' => 'ppe', 'Prupe.3G164600' => 'ppe', 'Prupe.3G250700' => 'ppe', 'Prupe.4G075100' => 'ppe', 'Prupe.6G323300' => 'ppe', 'Psat0s1217g0160' => 'psa', 'Psat1g170640' => 'psa', 'Psat2g093160' => 'psa', 'Psat4g158040' => 'psa', 'Psat5g014440' => 'psa', 'Psat6g004280' => 'psa', 'Psat7g092560' => 'psa', 'PSO210G2953' => 'pso', 'PSO210G3661' => 'pso', 'PSO339G4299' => 'pso', 'PSO384G1370' => 'pso', 'PSO384G2016' => 'pso', 'PSO541G6393' => 'pso', 'PSO675G7614' => 'pso', 'QL02p011043' => 'qlo', 'QL02p059649' => 'qlo', 'QL02p103834' => 'qlo', 'QL03p012834' => 'qlo', 'QL04p055860' => 'qlo', 'QL05p060096' => 'qlo', 'RcHm_v2.0_Chr1g0357841' => 'rch', 'RcHm_v2.0_Chr2g0165191' => 'rch', 'RcHm_v2.0_Chr3g0455271' => 'rch', 'RcHm_v2.0_Chr3g0492371' => 'rch', 'RcHm_v2.0_Chr5g0013071' => 'rch', 'RcHm_v2.0_Chr6g0302531' => 'rch', 'Rhsim01G0165800' => 'rsi', 'Rhsim07G0246000' => 'rsi', 'Rhsim08G0020000' => 'rsi', 'Rhsim10G0055400' => 'rsi', 'Rhsim10G0181200' => 'rsi', 'Rhsim11G0114500' => 'rsi', 'Rhsim11G0115400' => 'rsi', 'Rhsim11G0115600' => 'rsi', 'Rhsim11G0116400' => 'rsi', 'Rhsim11G0116600' => 'rsi', 'Rhsim11G0116800' => 'rsi', 'RhsimUnG0064300' => 'rsi', 'RhsimUnG0091500' => 'rsi', 'RhsimUnG0135100' => 'rsi', 'Sabra02G0020100' => 'sbr', 'Sabra02G0146200' => 'sbr', 'Sabra04G0055500' => 'sbr', 'Sabra04G0070300' => 'sbr', 'Sabra05G0032700' => 'sbr', 'Sabra05G0182900' => 'sbr', 'Sabra13G0021800' => 'sbr', 'Sabra16G0232000' => 'sbr', 'Sabra17G0111000' => 'sbr', 'Sabra17G0114000' => 'sbr', 'SalBow1G2348' => 'sbo', 'SalBow1G2787' => 'sbo', 'SalBow3G2002' => 'sbo', 'SalBow3G4552' => 'sbo', 'SalBow5G3628' => 'sbo', 'SalBow6G1136' => 'sbo', 'SalBow6G1287' => 'sbo', 'SalBow7G0010' => 'sbo', 'SalBow8G3589' => 'sbo', 'Sc05g0006700' => 'sci', 'Sc09g0003060' => 'sci', 'Sc15g0005100' => 'sci', 'Sc23g0002520' => 'sci', 'Sed0008052' => 'sed', 'Sed0009237' => 'sed', 'Sed0024173' => 'sed', 'Sed0025337' => 'sed', 'SEGI_01880' => 'sgi', 'SEGI_04609' => 'sgi', 'SEGI_05590' => 'sgi', 'SEGI_12948' => 'sgi', 'SEGI_13553' => 'sgi', 'SEGI_14386' => 'sgi', 'SEGI_15951' => 'sgi', 'SEGI_24193' => 'sgi', 'SEGI_25013' => 'sgi', 'SGA_v2.0_scaffold106G30624' => 'sas', 'SGA_v2.0_scaffold1G00138' => 'sas', 'SGA_v2.0_scaffold254G45219' => 'sas', 'SGA_v2.0_scaffold92G28261' => 'sas', 'SGA_v2.0_scaffold98G29317' => 'sas', 'SHI08080' => 'shi', 'SHI35743' => 'shi', 'SMO143G0208' => 'smo', 'SMO143G0285' => 'smo', 'SMO147G0076' => 'smo', 'SMO176G0001' => 'smo', 'SMO351G0581' => 'smo', 'Solyc01g095190.2' => 'sly', 'Solyc02g071160.4' => 'sly', 'Solyc03g026030.1' => 'sly', 'Solyc05g051210.3' => 'sly', 'Solyc10g052600.1' => 'sly', 'Solyc11g010580.2' => 'sly', 'Solyc12g056285.1' => 'sly', 'Sopen01g038980' => 'spe', 'Sopen01g042880' => 'spe', 'Sopen01g042890' => 'spe', 'Sopen02g020240' => 'spe', 'Sopen03g004860' => 'spe', 'Sopen05g029580' => 'spe', 'Sopen10g023340' => 'spe', 'Sopen11g005380' => 'spe', 'Sp1g25690' => 'spa', 'Sp2g16360' => 'spa', 'Sp3g04250' => 'spa', 'Sp6g00880' => 'spa', 'TAR362G0033' => 'tar', 'TAR371G0459' => 'tar', 'TAR374G0806' => 'tar', 'TAR375G0945' => 'tar', 'TAR381G0512' => 'tar', 'TAR381G0842' => 'tar', 'TAR381G1577' => 'tar', 'TAR624G1284' => 'tar', 'TAR625G1421' => 'tar', 'TAR626G0968' => 'tar', 'TAR629G1576' => 'tar', 'TAR629G1886' => 'tar', 'TAR633G2598' => 'tar', 'TAR636G1545' => 'tar', 'THA.LOC104812658' => 'tha', 'THA.LOC104817043' => 'tha', 'THA.LOC104818707' => 'tha', 'THA.LOC104820635' => 'tha', 'THA.LOC104826476' => 'tha', 'Thecc.01G351400' => 'tca', 'Thecc.04G103700' => 'tca', 'Thecc.05G310600' => 'tca', 'Thecc.06G017500' => 'tca', 'Thecc.06G156300' => 'tca', 'Thecc.08G041200' => 'tca', 'Thhalv10004321m.g' => 'esa', 'Thhalv10010017m.g' => 'esa', 'Thhalv10020681m.g' => 'esa', 'Thhalv10028611m.g' => 'esa', 'TPR.G17500' => 'tpr', 'TPR.G18146' => 'tpr', 'TPR.G2675' => 'tpr', 'TPR.G30288' => 'tpr', 'TPR.G9981' => 'tpr', 'TWI56G1197' => 'twi', 'TWI56G1200' => 'twi', 'TWI73G0307' => 'twi', 'unitig_21.g20113' => 'ugi', 'unitig_26.g10093' => 'ugi', 'unitig_26.g9844' => 'ugi', 'unitig_60.g25501' => 'ugi', 'unitig_744.g24434' => 'ugi', 'unitig_749.g13855' => 'ugi', 'unitig_749.g14115' => 'ugi', 'unitig_8.g4917' => 'ugi', 'vmacro04338' => 'vma', 'vmacro20637' => 'vma', 'vmacro20888' => 'vma', 'vmacro22845' => 'vma', 'vmacro23214' => 'vma', 'VMungo0251G1790' => 'vmu', 'VMungo0331G1608' => 'vmu', 'VMungo0540G1753' => 'vmu', 'VMungo0647G0460' => 'vmu', 'VMungo0647G2256' => 'vmu', 'VMungo1215G3430' => 'vmu', 'VMungo1309G0094' => 'vmu', 'VMungo1383G0576' => 'vmu', 'Zm00001eb025150' => 'zma', 'Zm00001eb081850' => 'zma', 'Zm00001eb145350' => 'zma', 'Zm00001eb173970' => 'zma', 'Zm00001eb216190' => 'zma', 'Zm00001eb260260' => 'zma', 'Zm00001eb260740' => 'zma', 'Zm00001eb281620' => 'zma', 'Zm00001eb310650' => 'zma', 'Zm00001eb377590' => 'zma', 'Zm00001eb377610' => 'zma', 'Zm00001eb377640' => 'zma', 'Zm00001eb377680' => 'zma', 'Zm00001eb377710' => 'zma', 'Zm00001eb408180' => 'zma', 'Zm00001eb408190' => 'zma', 'Zm00001eb416590' => 'zma' ) $gf_id = 'HOM05D000830' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000830' ) $data_identifier = 'HOM05D000830' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 12, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 18, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 10, 'cqu' => (int) 6, 'bca' => (int) 17, 'bol' => (int) 6, 'bra' => (int) 5, 'can' => (int) 7, 'cansat' => (int) 5, 'chi' => (int) 4, 'cru' => (int) 5, 'car' => (int) 5, 'ccan' => (int) 4, 'cde' => (int) 9, 'cfa' => (int) 6, 'ccl' => (int) 7, 'cil' => (int) 9, 'cla' => (int) 3, 'col' => (int) 7, 'cpa' => (int) 4, 'csa' => (int) 3, 'camsi' => (int) 13, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 8, 'eca' => (int) 5, 'bvu' => (int) 3, 'egr' => (int) 8, 'fan' => (int) 32, 'fve' => (int) 6, 'gma' => (int) 11, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 5, 'hma' => (int) 9, 'vpl' => (int) 5, 'sun' => (int) 2, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 7, 'lsa' => (int) 10, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 11, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 17, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 4, 'pax' => (int) 13, 'pgr' => (int) 6, 'stu' => (int) 10, 'pvu' => (int) 6, 'ptr' => (int) 11, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 7, 'qlo' => (int) 6, 'rch' => (int) 6, 'rsi' => (int) 14, 'sbr' => (int) 10, 'sbo' => (int) 9, 'sci' => (int) 4, 'sed' => (int) 4, 'sgi' => (int) 9, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 5, 'sly' => (int) 7, 'spe' => (int) 8, 'spa' => (int) 4, 'tar' => (int) 14, 'tha' => (int) 5, 'tca' => (int) 6, 'esa' => (int) 4, 'tpr' => (int) 5, 'twi' => (int) 3, 'ugi' => (int) 8, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb416590' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1